IL_6ZJ3_021
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAAC*GGGUUAAAAGUCC
- Length
- 17 nucleotides
- Bulged bases
- 6ZJ3|1|LC|C|606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_021 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1406
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6ZJ3|1|LC|G|581
6ZJ3|1|LC|A|582
6ZJ3|1|LC|A|583
6ZJ3|1|LC|C|584
*
6ZJ3|1|LC|G|595
6ZJ3|1|LC|G|596
6ZJ3|1|LC|G|597
6ZJ3|1|LC|U|598
6ZJ3|1|LC|U|599
6ZJ3|1|LC|A|600
6ZJ3|1|LC|A|601
6ZJ3|1|LC|A|602
6ZJ3|1|LC|A|603
6ZJ3|1|LC|G|604
6ZJ3|1|LC|U|605
6ZJ3|1|LC|C|606
6ZJ3|1|LC|C|607
Current chains
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain Li
- Ribosomal protein uL22
- Chain Ll
- Ribosomal protein uL24
Coloring options: