IL_6ZJ3_032

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CC*GAUG

Length

6 nucleotides

Bulged bases

6ZJ3|1|LD|U|709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_032 not in the Motif Atlas

Geometric match to IL_3MXH_004

Geometric discrepancy: 0.1036

The information below is about IL_3MXH_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

6ZJ3|1|LD|C|689
6ZJ3|1|LD|C|690
*
6ZJ3|1|LD|G|707
6ZJ3|1|LD|A|708
6ZJ3|1|LD|U|709
6ZJ3|1|LD|G|710

Current chains

Chain LD

LSU rRNA chain 3

Nearby chains

Chain LZ

Ribosomal protein eL14

Chain Lg

Ribosomal protein eL20