IL_6ZJ3_033

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6ZJ3|1|LE|U|771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_033 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.2896

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6ZJ3|1|LE|G|770
6ZJ3|1|LE|U|771
6ZJ3|1|LE|G|772
*
6ZJ3|1|LE|C|866
6ZJ3|1|LE|C|867

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LR

Ribosomal protein uL4