IL_6ZJ3_034

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UG*CCG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LE|C|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_034 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.3066

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6ZJ3|1|LE|U|791
6ZJ3|1|LE|G|792
*
6ZJ3|1|LE|C|849
6ZJ3|1|LE|C|850
6ZJ3|1|LE|G|851

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain Lg

Ribosomal protein eL20

Chain Lh

Ribosomal protein eL21

Chain Lr

Ribosomal protein uL30