IL_6ZJ3_037
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- ACC*G(OMG)U
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_037 not in the Motif Atlas
- Geometric match to IL_4WF9_042
- Geometric discrepancy: 0.1252
- The information below is about IL_4WF9_042
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6ZJ3|1|LE|A|939
6ZJ3|1|LE|C|940
6ZJ3|1|LE|C|941
*
6ZJ3|1|LF|G|1825
6ZJ3|1|LF|OMG|1826
6ZJ3|1|LF|U|1827
Current chains
- Chain LE
- LSU rRNA chain 4
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Li
- Ribosomal protein uL22
- Chain Lu
- Ribosomal protein eL32
Coloring options: