IL_6ZJ3_042

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGAC*G(OMU)G

Length

7 nucleotides

Bulged bases

6ZJ3|1|LE|G|1046

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_042 not in the Motif Atlas

Geometric match to IL_4LFB_010

Geometric discrepancy: 0.116

The information below is about IL_4LFB_010

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZJ3|1|LE|C|1045
6ZJ3|1|LE|G|1046
6ZJ3|1|LE|A|1047
6ZJ3|1|LE|C|1048
*
6ZJ3|1|LE|G|1080
6ZJ3|1|LE|OMU|1081
6ZJ3|1|LE|G|1082

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain La

Ribosomal protein uL15

Chain Le

Ribosomal protein eL18

Chain Lq

Ribosomal protein eL29