IL_6ZJ3_045
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CC(OMG)A(A2M)AG*CUAG(PSU)AGCUG
- Length
- 17 nucleotides
- Bulged bases
- 6ZJ3|1|LE|A|1233, 6ZJ3|1|LE|G|1237
- QA status
- Modified nucleotides: OMG, A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LE|C|1102
6ZJ3|1|LE|C|1103
6ZJ3|1|LE|OMG|1104
6ZJ3|1|LE|A|1105
6ZJ3|1|LE|A2M|1106
6ZJ3|1|LE|A|1107
6ZJ3|1|LE|G|1108
*
6ZJ3|1|LE|C|1231
6ZJ3|1|LE|U|1232
6ZJ3|1|LE|A|1233
6ZJ3|1|LE|G|1234
6ZJ3|1|LE|PSU|1235
6ZJ3|1|LE|A|1236
6ZJ3|1|LE|G|1237
6ZJ3|1|LE|C|1238
6ZJ3|1|LE|U|1239
6ZJ3|1|LE|G|1240
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Lb
- Ribosomal protein eL15
- Chain Ly
- Ribosomal protein eL37
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