IL_6ZJ3_052

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LF|A|1757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_052 not in the Motif Atlas

Geometric match to IL_1I9X_002

Geometric discrepancy: 0.1924

The information below is about IL_1I9X_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6ZJ3|1|LE|C|1246
6ZJ3|1|LE|U|1247
*
6ZJ3|1|LF|A|1756
6ZJ3|1|LF|A|1757
6ZJ3|1|LF|G|1758

Current chains

Chain LE

LSU rRNA chain 4

Chain LF

LSU rRNA chain 5

Nearby chains

Chain La

Ribosomal protein uL15

Chain Le

Ribosomal protein eL18

Chain Lu

Ribosomal protein eL32