IL_6ZJ3_053
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UUU*A(PSU)A
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_053 not in the Motif Atlas
- Homologous match to IL_8C3A_037
- Geometric discrepancy: 0.3128
- The information below is about IL_8C3A_037
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZJ3|1|LE|U|1254
6ZJ3|1|LE|U|1255
6ZJ3|1|LE|U|1256
*
6ZJ3|1|LE|A|1265
6ZJ3|1|LE|PSU|1266
6ZJ3|1|LE|A|1267
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- Ribosomal protein eL13
- Chain La
- Ribosomal protein uL15
- Chain Le
- Ribosomal protein eL18
- Chain Lh
- Ribosomal protein eL21
- Chain Lq
- Ribosomal protein eL29
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