IL_6ZJ3_056

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGU*AC

Length

5 nucleotides

Bulged bases

6ZJ3|1|LE|G|1304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_056 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.0899

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6ZJ3|1|LE|G|1303
6ZJ3|1|LE|G|1304
6ZJ3|1|LE|U|1305
*
6ZJ3|1|LF|A|1468
6ZJ3|1|LF|C|1469

Current chains

Chain LE

LSU rRNA chain 4

Chain LF

LSU rRNA chain 5

Nearby chains

Chain Lh

Ribosomal protein eL21

Chain Lq

Ribosomal protein eL29

Chain Lr

Ribosomal protein uL30