IL_6ZJ3_060
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(OMG)CA*UCG
- Length
- 7 nucleotides
- Bulged bases
- 6ZJ3|1|LE|C|1325
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_060 not in the Motif Atlas
- Geometric match to IL_7RQB_030
- Geometric discrepancy: 0.2735
- The information below is about IL_7RQB_030
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_52767.4
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 28
Unit IDs
6ZJ3|1|LE|C|1323
6ZJ3|1|LE|OMG|1324
6ZJ3|1|LE|C|1325
6ZJ3|1|LE|A|1326
*
6ZJ3|1|LE|U|1368
6ZJ3|1|LE|C|1369
6ZJ3|1|LE|G|1370
Current chains
- Chain LE
- LSU rRNA chain 4
Nearby chains
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Ld
- Ribosomal protein uL18
- Chain Lh
- Ribosomal protein eL21
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