IL_6ZJ3_061

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AUG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_061 not in the Motif Atlas

Geometric match to IL_7RQB_083

Geometric discrepancy: 0.1944

The information below is about IL_7RQB_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

6ZJ3|1|LE|A|1326
6ZJ3|1|LE|U|1327
6ZJ3|1|LE|G|1328
*
6ZJ3|1|LE|C|1366
6ZJ3|1|LE|C|1367
6ZJ3|1|LE|U|1368

Current chains

Chain LE

LSU rRNA chain 4

Nearby chains

Chain LO

5S ribosomal RNA; 5S rRNA

Chain Lc

60S ribosomal protein L10

Chain Lh

Ribosomal protein eL21