IL_6ZJ3_070
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUG*C(A2M)G
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_070 not in the Motif Atlas
- Geometric match to IL_4E59_001
- Geometric discrepancy: 0.111
- The information below is about IL_4E59_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
6ZJ3|1|LF|C|1493
6ZJ3|1|LF|U|1494
6ZJ3|1|LF|G|1495
*
6ZJ3|1|LF|C|1501
6ZJ3|1|LF|A2M|1502
6ZJ3|1|LF|G|1503
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lq
- Ribosomal protein eL29
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