IL_6ZJ3_072
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAUCCCGAGUG*UGUGUCUCCC
- Length
- 21 nucleotides
- Bulged bases
- 6ZJ3|1|LF|U|1550, 6ZJ3|1|LF|G|1699, 6ZJ3|1|LF|U|1702, 6ZJ3|1|LF|C|1703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ZJ3|1|LF|G|1541
6ZJ3|1|LF|A|1542
6ZJ3|1|LF|U|1543
6ZJ3|1|LF|C|1544
6ZJ3|1|LF|C|1545
6ZJ3|1|LF|C|1546
6ZJ3|1|LF|G|1547
6ZJ3|1|LF|A|1548
6ZJ3|1|LF|G|1549
6ZJ3|1|LF|U|1550
6ZJ3|1|LF|G|1551
*
6ZJ3|1|LF|U|1696
6ZJ3|1|LF|G|1697
6ZJ3|1|LF|U|1698
6ZJ3|1|LF|G|1699
6ZJ3|1|LF|U|1700
6ZJ3|1|LF|C|1701
6ZJ3|1|LF|U|1702
6ZJ3|1|LF|C|1703
6ZJ3|1|LF|C|1704
6ZJ3|1|LF|C|1705
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LD
- LSU rRNA chain 3
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain LW
- Ribosomal protein uL13
- Chain LZ
- Ribosomal protein eL14
- Chain Lg
- Ribosomal protein eL20
- Chain Lr
- Ribosomal protein uL30
- Chain Lv
- Ribosomal protein eL33
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