IL_6ZJ3_073

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(OMU)G*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_073 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1439

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZJ3|1|LF|C|1552
6ZJ3|1|LF|OMU|1553
6ZJ3|1|LF|G|1554
*
6ZJ3|1|LF|C|1693
6ZJ3|1|LF|A|1694
6ZJ3|1|LF|G|1695

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LO

5S ribosomal RNA; 5S rRNA

Chain LW

Ribosomal protein uL13

Chain LZ

Ribosomal protein eL14

Chain Lg

Ribosomal protein eL20

Chain Lr

Ribosomal protein uL30