IL_6ZJ3_074
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGC*G(PSU)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_074 not in the Motif Atlas
- Geometric match to IL_5VCI_005
- Geometric discrepancy: 0.1617
- The information below is about IL_5VCI_005
- Detailed Annotation
- Not an internal loop
- Broad Annotation
- Not an internal loop
- Motif group
- IL_64417.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
6ZJ3|1|LF|G|1554
6ZJ3|1|LF|G|1555
6ZJ3|1|LF|C|1556
*
6ZJ3|1|LF|G|1691
6ZJ3|1|LF|PSU|1692
6ZJ3|1|LF|C|1693
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain LO
- 5S ribosomal RNA; 5S rRNA
- Chain LT
- Ribosomal protein uL6
- Chain LW
- Ribosomal protein uL13
- Chain LZ
- Ribosomal protein eL14
- Chain Lg
- Ribosomal protein eL20
Coloring options: