IL_6ZJ3_077

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

6ZJ3|1|LF|U|1580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_077 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.1884

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6ZJ3|1|LF|A|1579
6ZJ3|1|LF|U|1580
6ZJ3|1|LF|G|1581
*
6ZJ3|1|LF|C|1668
6ZJ3|1|LF|U|1669

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LO

5S ribosomal RNA; 5S rRNA

Chain Lc

60S ribosomal protein L10

Chain Lg

Ribosomal protein eL20