IL_6ZJ3_082

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LF|A|1771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_082 not in the Motif Atlas

Homologous match to IL_8C3A_062

Geometric discrepancy: 0.4912

The information below is about IL_8C3A_062

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZJ3|1|LF|C|1770
6ZJ3|1|LF|A|1771
6ZJ3|1|LF|G|1772
*
6ZJ3|1|LF|C|1805
6ZJ3|1|LF|G|1806

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LA

5.8S ribosomal RNA; 5.8S rRNA

Chain LR

Ribosomal protein uL4

Chain Lo

Ribosomal protein eLEgr1

Chain Lu

Ribosomal protein eL32