IL_6ZJ3_085

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_085 not in the Motif Atlas

Geometric match to IL_4V9F_017

Geometric discrepancy: 0.111

The information below is about IL_4V9F_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6ZJ3|1|LF|C|1844
6ZJ3|1|LF|C|1845
6ZJ3|1|LF|A|1846
*
6ZJ3|1|LF|U|1885
6ZJ3|1|LF|U|1886
6ZJ3|1|LF|G|1887

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain Lf

Ribosomal protein eL19

Chain Lt

Ribosomal protein eL31