IL_6ZJ3_086

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(PSU)G*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_086 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.2056

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

6ZJ3|1|LF|G|1858
6ZJ3|1|LF|PSU|1859
6ZJ3|1|LF|G|1860
*
6ZJ3|1|LF|C|1873
6ZJ3|1|LF|G|1874
6ZJ3|1|LF|C|1875

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LN

LSU rRNA chain 13

Chain Li

Ribosomal protein uL22

Chain Lt

Ribosomal protein eL31