IL_6ZJ3_090
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- ACCAAAC*G(A2M)AU
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LF|A|1917
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_090 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.2122
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6ZJ3|1|LF|A|1914
6ZJ3|1|LF|C|1915
6ZJ3|1|LF|C|1916
6ZJ3|1|LF|A|1917
6ZJ3|1|LF|A|1918
6ZJ3|1|LF|A|1919
6ZJ3|1|LF|C|1920
*
6ZJ3|1|LF|G|1928
6ZJ3|1|LF|A2M|1929
6ZJ3|1|LF|A|1930
6ZJ3|1|LF|U|1931
Current chains
- Chain LF
- LSU rRNA chain 5
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
- Chain Li
- Ribosomal protein uL22
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