IL_6ZJ3_092
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UGCG*CUA
- Length
- 7 nucleotides
- Bulged bases
- 6ZJ3|1|LG|C|2016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_092 not in the Motif Atlas
- Geometric match to IL_4JGN_004
- Geometric discrepancy: 0.1569
- The information below is about IL_4JGN_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
6ZJ3|1|LG|U|2014
6ZJ3|1|LG|G|2015
6ZJ3|1|LG|C|2016
6ZJ3|1|LG|G|2017
*
6ZJ3|1|LG|C|2027
6ZJ3|1|LG|U|2028
6ZJ3|1|LG|A|2029
Current chains
- Chain LG
- LSU rRNA chain 6
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lf
- Ribosomal protein eL19
- Chain Lk
- Ribosomal protein uL23
- Chain Lw
- Ribosomal protein eL34
- Chain Lz
- Ribosomal protein eL38
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