IL_6ZJ3_093
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- UG*CUUG
- Length
- 6 nucleotides
- Bulged bases
- 6ZJ3|1|LH|U|2281, 6ZJ3|1|LH|U|2282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_093 not in the Motif Atlas
- Geometric match to IL_1KXK_003
- Geometric discrepancy: 0.1292
- The information below is about IL_1KXK_003
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
6ZJ3|1|LG|U|2036
6ZJ3|1|LG|G|2037
*
6ZJ3|1|LH|C|2280
6ZJ3|1|LH|U|2281
6ZJ3|1|LH|U|2282
6ZJ3|1|LH|G|2283
Current chains
- Chain LG
- LSU rRNA chain 6
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Lk
- Ribosomal protein uL23
- Chain Lw
- Ribosomal protein eL34
Coloring options: