IL_6ZJ3_094

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UCC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_094 not in the Motif Atlas

Geometric match to IL_1U9S_007

Geometric discrepancy: 0.1198

The information below is about IL_1U9S_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZJ3|1|LG|U|2085
6ZJ3|1|LG|C|2086
6ZJ3|1|LG|C|2087
*
6ZJ3|1|LH|G|2256
6ZJ3|1|LH|A|2257
6ZJ3|1|LH|A|2258

Current chains

Chain LG

LSU rRNA chain 6

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain Ln

Ribosomal protein eL27

Chain Lw

Ribosomal protein eL34