IL_6ZJ3_097

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LG|U|2220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_097 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.3463

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6ZJ3|1|LG|C|2110
6ZJ3|1|LG|U|2111
*
6ZJ3|1|LG|A|2219
6ZJ3|1|LG|U|2220
6ZJ3|1|LG|G|2221

Current chains

Chain LG

LSU rRNA chain 6

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain Lf

Ribosomal protein eL19

Chain Lj

Ribosomal protein eL22

Chain Lz

Ribosomal protein eL38