IL_6ZJ3_108
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGG(A2M)A*U(OMC)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_108 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3677
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
6ZJ3|1|LH|G|2355
6ZJ3|1|LH|G|2356
6ZJ3|1|LH|G|2357
6ZJ3|1|LH|A2M|2358
6ZJ3|1|LH|A|2359
*
6ZJ3|1|LH|U|2824
6ZJ3|1|LH|OMC|2825
6ZJ3|1|LH|C|2826
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain LY
- Ribosomal protein uL14
- Chain Lm
- Ribosomal protein eL24
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