IL_6ZJ3_112

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CAGAGG*C(PSU)CGUG(PSU)G

Length

14 nucleotides

Bulged bases

6ZJ3|1|LH|U|2589

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LH|C|2402
6ZJ3|1|LH|A|2403
6ZJ3|1|LH|G|2404
6ZJ3|1|LH|A|2405
6ZJ3|1|LH|G|2406
6ZJ3|1|LH|G|2407
*
6ZJ3|1|LH|C|2585
6ZJ3|1|LH|PSU|2586
6ZJ3|1|LH|C|2587
6ZJ3|1|LH|G|2588
6ZJ3|1|LH|U|2589
6ZJ3|1|LH|G|2590
6ZJ3|1|LH|PSU|2591
6ZJ3|1|LH|G|2592

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LG

LSU rRNA chain 6

Chain LM

LSU rRNA chain 12

Chain Lf

Ribosomal protein eL19

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain SK

Ribosomal protein eS8