IL_6ZJ3_119

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_119 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.0903

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|LH|C|2684
6ZJ3|1|LH|OMC|2685
6ZJ3|1|LH|A|2686
6ZJ3|1|LH|G|2687
*
6ZJ3|1|LH|C|2733
6ZJ3|1|LH|G|2734

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain S1

Small subunit ribosomal RNA; SSU rRNA