IL_6ZJ3_121

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUGAUUG*CGCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LH|C|2692
6ZJ3|1|LH|U|2693
6ZJ3|1|LH|G|2694
6ZJ3|1|LH|A|2695
6ZJ3|1|LH|U|2696
6ZJ3|1|LH|U|2697
6ZJ3|1|LH|G|2698
*
6ZJ3|1|LH|C|2723
6ZJ3|1|LH|G|2724
6ZJ3|1|LH|C|2725
6ZJ3|1|LH|G|2726

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain S1

Small subunit ribosomal RNA; SSU rRNA

Chain S4

Transfer RNA; tRNA