IL_6ZJ3_122

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UCAAUG*CCAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LH|U|2699
6ZJ3|1|LH|C|2700
6ZJ3|1|LH|A|2701
6ZJ3|1|LH|A|2702
6ZJ3|1|LH|U|2703
6ZJ3|1|LH|G|2704
*
6ZJ3|1|LH|C|2718
6ZJ3|1|LH|C|2719
6ZJ3|1|LH|A|2720
6ZJ3|1|LH|A|2721
6ZJ3|1|LH|G|2722

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain Lx

Ribosomal protein eL36

Chain S4

Transfer RNA; tRNA