IL_6ZJ3_123

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_123 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.1738

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6ZJ3|1|LH|C|2705
6ZJ3|1|LH|G|2706
*
6ZJ3|1|LH|C|2715
6ZJ3|1|LH|A|2716
6ZJ3|1|LH|G|2717

Current chains

Chain LH

LSU rRNA chain 7

Nearby chains

Chain L4

Ribosomal protein eL43

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain Lx

Ribosomal protein eL36

Chain S4

Transfer RNA; tRNA