IL_6ZJ3_131
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- G(OMG)G*CCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_131 not in the Motif Atlas
- Geometric match to IL_5TBW_110
- Geometric discrepancy: 0.1086
- The information below is about IL_5TBW_110
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZJ3|1|LH|G|2882
6ZJ3|1|LH|OMG|2883
6ZJ3|1|LH|G|2884
*
6ZJ3|1|LI|C|3571
6ZJ3|1|LI|C|3572
6ZJ3|1|LI|U|3573
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain LW
- Ribosomal protein uL13
- Chain Li
- Ribosomal protein uL22
Coloring options: