IL_6ZJ3_135

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6ZJ3|1|LI|G|3178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_135 not in the Motif Atlas

Geometric match to IL_5J7L_325

Geometric discrepancy: 0.0688

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6ZJ3|1|LH|U|2911
6ZJ3|1|LH|A|2912
6ZJ3|1|LH|G|2913
*
6ZJ3|1|LI|U|3176
6ZJ3|1|LI|G|3177
6ZJ3|1|LI|G|3178
6ZJ3|1|LI|G|3179

Current chains

Chain LH

LSU rRNA chain 7

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L4

Ribosomal protein eL43

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain Lb

Ribosomal protein eL15

Chain S4

Transfer RNA; tRNA