IL_6ZJ3_138
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- U(OMG)CA*UUUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_138 not in the Motif Atlas
- Geometric match to IL_4EYA_010
- Geometric discrepancy: 0.1902
- The information below is about IL_4EYA_010
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.1
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
6ZJ3|1|LH|U|2924
6ZJ3|1|LH|OMG|2925
6ZJ3|1|LH|C|2926
6ZJ3|1|LH|A|2927
*
6ZJ3|1|LI|U|3009
6ZJ3|1|LI|U|3010
6ZJ3|1|LI|U|3011
6ZJ3|1|LI|A|3012
Current chains
- Chain LH
- LSU rRNA chain 7
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LV
- 60S ribosomal protein L7a
- Chain Lb
- Ribosomal protein eL15
- Chain SA
- Ribosomal protein eS1
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