IL_6ZJ3_141

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_141 not in the Motif Atlas

Geometric match to IL_7RQB_091

Geometric discrepancy: 0.3266

The information below is about IL_7RQB_091

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6ZJ3|1|LI|G|3035
6ZJ3|1|LI|U|3036
6ZJ3|1|LI|G|3037
*
6ZJ3|1|LI|C|3084
6ZJ3|1|LI|C|3085

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LP

Ribosomal protein uL2

Chain LV

60S ribosomal protein L7a

Chain Lw

Ribosomal protein eL34

Chain SA

Ribosomal protein eS1