IL_6ZJ3_155
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GG(OMC)UC*G(PSU)G(A2M)G(OMC)U
- Length
- 12 nucleotides
- Bulged bases
- 6ZJ3|1|LI|G|3532
- QA status
- Modified nucleotides: OMC, PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_155 not in the Motif Atlas
- Geometric match to IL_4V9F_022
- Geometric discrepancy: 0.3955
- The information below is about IL_4V9F_022
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6ZJ3|1|LI|G|3463
6ZJ3|1|LI|G|3464
6ZJ3|1|LI|OMC|3465
6ZJ3|1|LI|U|3466
6ZJ3|1|LI|C|3467
*
6ZJ3|1|LI|G|3530
6ZJ3|1|LI|PSU|3531
6ZJ3|1|LI|G|3532
6ZJ3|1|LI|A2M|3533
6ZJ3|1|LI|G|3534
6ZJ3|1|LI|OMC|3535
6ZJ3|1|LI|U|3536
Current chains
- Chain LI
- LSU rRNA chain 8
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LQ
- Ribosomal protein uL3
- Chain LY
- Ribosomal protein uL14
- Chain S2
- Transfer RNA; tRNA
Coloring options: