IL_6ZJ3_157

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUU*G(A2M)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_157 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1579

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6ZJ3|1|LI|C|3475
6ZJ3|1|LI|U|3476
6ZJ3|1|LI|U|3477
*
6ZJ3|1|LI|G|3499
6ZJ3|1|LI|A2M|3500
6ZJ3|1|LI|G|3501

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain LW

Ribosomal protein uL13

Chain LY

Ribosomal protein uL14