IL_6ZJ3_158

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UC*GAAG

Length

6 nucleotides

Bulged bases

6ZJ3|1|LI|A|3498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_158 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.3223

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6ZJ3|1|LI|U|3477
6ZJ3|1|LI|C|3478
*
6ZJ3|1|LI|G|3496
6ZJ3|1|LI|A|3497
6ZJ3|1|LI|A|3498
6ZJ3|1|LI|G|3499

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6

Chain LW

Ribosomal protein uL13