IL_6ZJ3_159

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LI|C|3480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_159 not in the Motif Atlas

Geometric match to IL_8GLP_083

Geometric discrepancy: 0.2614

The information below is about IL_8GLP_083

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

6ZJ3|1|LI|C|3479
6ZJ3|1|LI|C|3480
6ZJ3|1|LI|A|3481
*
6ZJ3|1|LI|U|3494
6ZJ3|1|LI|G|3495

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6