IL_6ZJ3_160

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_160 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.1115

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6ZJ3|1|LI|C|3482
6ZJ3|1|LI|C|3483
6ZJ3|1|LI|C|3484
*
6ZJ3|1|LI|G|3491
6ZJ3|1|LI|A|3492
6ZJ3|1|LI|G|3493

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LJ

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6