IL_6ZJ3_162

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_162 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2515

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ZJ3|1|LI|A|3545
6ZJ3|1|LI|OMC|3546
6ZJ3|1|LI|C|3547
*
6ZJ3|1|LI|G|3559
6ZJ3|1|LI|G|3560
6ZJ3|1|LI|U|3561

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain S3

Transfer RNA; tRNA