IL_6ZJ3_163

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6ZJ3|1|LI|A|3558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_163 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.219

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

6ZJ3|1|LI|C|3547
6ZJ3|1|LI|G|3548
*
6ZJ3|1|LI|C|3557
6ZJ3|1|LI|A|3558
6ZJ3|1|LI|G|3559

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LP

Ribosomal protein uL2

Chain S2

Transfer RNA; tRNA

Chain S3

Transfer RNA; tRNA