IL_6ZJ3_174

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GA(OMU)AC(PSU)G*C(OMU)GAAUC

Length

14 nucleotides

Bulged bases

6ZJ3|1|LJ|A|3721

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ZJ3|1|LJ|G|3692
6ZJ3|1|LJ|A|3693
6ZJ3|1|LJ|OMU|3694
6ZJ3|1|LJ|A|3695
6ZJ3|1|LJ|C|3696
6ZJ3|1|LJ|PSU|3697
6ZJ3|1|LJ|G|3698
*
6ZJ3|1|LJ|C|3717
6ZJ3|1|LJ|OMU|3718
6ZJ3|1|LJ|G|3719
6ZJ3|1|LJ|A|3720
6ZJ3|1|LJ|A|3721
6ZJ3|1|LJ|U|3722
6ZJ3|1|LJ|C|3723

Current chains

Chain LJ

LSU rRNA chain 9

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6

Chain LW

Ribosomal protein uL13