IL_6ZJ3_175

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_175 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1452

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6ZJ3|1|LJ|G|3698
6ZJ3|1|LJ|A|3699
6ZJ3|1|LJ|C|3700
*
6ZJ3|1|LJ|G|3715
6ZJ3|1|LJ|C|3716
6ZJ3|1|LJ|C|3717

Current chains

Chain LJ

LSU rRNA chain 9

Nearby chains

Chain L2

Ribosomal protein eL40

Chain LI

Large subunit ribosomal RNA; LSU rRNA

Chain LT

Ribosomal protein uL6

Chain LW

Ribosomal protein uL13