IL_6ZJ3_176
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GCA*UC
- Length
- 5 nucleotides
- Bulged bases
- 6ZJ3|1|LK|C|3753
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_176 not in the Motif Atlas
- Geometric match to IL_1S03_002
- Geometric discrepancy: 0.2408
- The information below is about IL_1S03_002
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 67
Unit IDs
6ZJ3|1|LK|G|3752
6ZJ3|1|LK|C|3753
6ZJ3|1|LK|A|3754
*
6ZJ3|1|LK|U|3802
6ZJ3|1|LK|C|3803
Current chains
- Chain LK
- LSU rRNA chain 10
Nearby chains
- Chain LL
- LSU rRNA chain 11
- Chain LU
- Ribosomal protein eL6
- Chain LW
- Ribosomal protein uL13
- Chain LZ
- Ribosomal protein eL14
- Chain Lv
- Ribosomal protein eL33
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