IL_6ZJ3_177

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6ZJ3|1|LK|U|3769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_177 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.1575

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6ZJ3|1|LK|G|3768
6ZJ3|1|LK|U|3769
6ZJ3|1|LK|A|3770
*
6ZJ3|1|LK|U|3781
6ZJ3|1|LK|C|3782

Current chains

Chain LK

LSU rRNA chain 10

Nearby chains

Chain LT

Ribosomal protein uL6

Chain LW

Ribosomal protein uL13

Chain LZ

Ribosomal protein eL14