IL_6ZJ3_181

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGAG*UGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_181 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.2059

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6ZJ3|1|LL|C|3852
6ZJ3|1|LL|G|3853
6ZJ3|1|LL|A|3854
6ZJ3|1|LL|G|3855
*
6ZJ3|1|LL|U|3866
6ZJ3|1|LL|G|3867
6ZJ3|1|LL|A|3868
6ZJ3|1|LL|G|3869

Current chains

Chain LL

LSU rRNA chain 11

Nearby chains

Chain LW

Ribosomal protein uL13

Chain LZ

Ribosomal protein eL14