IL_6ZJ3_189

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_189 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.1489

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ZJ3|1|LN|C|3999
6ZJ3|1|LN|U|4000
6ZJ3|1|LN|G|4001
*
6ZJ3|1|LN|C|4027
6ZJ3|1|LN|U|4028
6ZJ3|1|LN|G|4029

Current chains

Chain LN

LSU rRNA chain 13

Nearby chains

Chain LM

LSU rRNA chain 12

Chain LQ

Ribosomal protein uL3