IL_6ZJ3_206

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUGUGCUCG*CC

Length

11 nucleotides

Bulged bases

6ZJ3|1|S1|U|129, 6ZJ3|1|S1|G|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_206 not in the Motif Atlas

Geometric match to IL_8C3A_128

Geometric discrepancy: 0.1653

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6ZJ3|1|S1|G|128
6ZJ3|1|S1|U|129
6ZJ3|1|S1|G|130
6ZJ3|1|S1|U|131
6ZJ3|1|S1|G|132
6ZJ3|1|S1|C|133
6ZJ3|1|S1|U|134
6ZJ3|1|S1|C|135
6ZJ3|1|S1|G|136
*
6ZJ3|1|S1|C|153
6ZJ3|1|S1|C|154

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SK

Ribosomal protein eS8