IL_6ZJ3_214

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UUGA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_214 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.189

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZJ3|1|S1|U|417
6ZJ3|1|S1|U|418
6ZJ3|1|S1|G|419
6ZJ3|1|S1|A|420
*
6ZJ3|1|S1|U|442
6ZJ3|1|S1|G|443

Current chains

Chain S1

18S rRNA

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain Lf

Ribosomal protein eL19

Chain SK

Ribosomal protein eS8

Chain SU

Ribosomal protein uS17